Table 1 KEGG enrichment analysis of top 500 genes with high and low DE prior probabilities
From: GEOlimma: differential expression analysis and feature selection using pre-existing microarray data
Pathway IDs | Description | GeneRatio | BgRatio | P value | P value adjustment | Count | Source |
|---|---|---|---|---|---|---|---|
hsa04110 | Cell cycle | 21/242 | 124/7528 | 2.94E−10 | 7.83E−08 | 21 | HighPrior |
hsa05222 | Small cell lung cancer | 13/242 | 93/7528 | 7.47E−06 | 9.94E−04 | 13 | HighPrior |
hsa04115 | p53 signaling pathway | 11/242 | 72/7528 | 1.61E−05 | 1.43E−03 | 11 | HighPrior |
hsa05169 | Epstein-Barr virus infection | 18/242 | 201/7528 | 7.63E−05 | 3.57E−03 | 18 | HighPrior |
hsa05206 | MicroRNAs in cancer | 23/242 | 299/7528 | 8.53E−05 | 3.57E−03 | 23 | HighPrior |
hsa05218 | Melanoma | 10/242 | 72/7528 | 9.09E−05 | 3.57E−03 | 10 | HighPrior |
hsa05202 | Transcriptional misregulation in cancer | 17/242 | 186/7528 | 9.40E−05 | 3.57E−03 | 17 | HighPrior |
hsa04210 | Apoptosis | 14/242 | 136/7528 | 1.12E−04 | 3.71E−03 | 14 | HighPrior |
hsa05205 | Proteoglycans in cancer | 17/242 | 201/7528 | 2.42E−04 | 7.15E−03 | 17 | HighPrior |
hsa04068 | FoxO signaling pathway | 13/242 | 132/7528 | 3.05E−04 | 8.11E−03 | 13 | HighPrior |
hsa05418 | Fluid shear stress and atherosclerosis | 13/242 | 139/7528 | 5.05E−04 | 1.22E−02 | 13 | HighPrior |
hsa05220 | Chronic myeloid leukemia | 9/242 | 76/7528 | 6.87E−04 | 1.52E−02 | 9 | HighPrior |
hsa03030 | DNA replication | 6/242 | 36/7528 | 8.98E−04 | 1.84E−02 | 6 | HighPrior |
hsa05130 | Pathogenic Escherichia coli infection | 7/242 | 55/7528 | 1.77E−03 | 3.36E−02 | 7 | HighPrior |
hsa04540 | Gap junction | 9/242 | 88/7528 | 1.97E−03 | 3.50E−02 | 9 | HighPrior |
hsa01524 | Platinum drug resistance | 8/242 | 73/7528 | 2.25E−03 | 3.74E−02 | 8 | HighPrior |
hsa05167 | Kaposi sarcoma-associated herpesvirus infection | 14/242 | 186/7528 | 2.60E−03 | 3.83E−02 | 14 | HighPrior |
hsa04380 | Osteoclast differentiation | 11/242 | 128/7528 | 2.67E−03 | 3.83E−02 | 11 | HighPrior |
hsa04668 | TNF signaling pathway | 10/242 | 110/7528 | 2.74E−03 | 3.83E−02 | 10 | HighPrior |
hsa04740 | Olfactory transduction | 17/68 | 448/7528 | 2.91E−07 | 3.08E−05 | 17 | LowPrior |
hsa04742 | Taste transduction | 8/68 | 83/7528 | 6.70E−07 | 3.55E−05 | 8 | LowPrior |
hsa04080 | Neuroactive ligand-receptor interaction | 14/68 | 338/7528 | 1.40E−06 | 4.96E−05 | 14 | LowPrior |
hsa05320 | Autoimmune thyroid disease | 4/68 | 53/7528 | 1.28E−03 | 3.39E−02 | 4 | LowPrior |