Table 2 Differential expression comparison details and Limma and GEOlimma DE gene counts for all samples and 10 subsets of 40 samples of each comparison
From: GEOlimma: differential expression analysis and feature selection using pre-existing microarray data
Datasets | Source | Sample size | Limma DEGs | GEOlimma DEGs | Limma DEGs of DE sample | GEOlimma DEGs of DE sample |
|---|---|---|---|---|---|---|
Asthma vs nonasthma | Moffatt et al. 2007 | 268 vs 136 | 0 | – | 0 | – |
Nonleuk vs MDS | Mills et al. 2009 | 164 vs 69 | 2619 | 5823 | 98.5±161.4 | 404.3±600.9 |
Nonleuk vs AML | Mills et al. 2009 | 202 vs 69 | 8610 | 13379 | 2788.9±901.5 | 5879.3±1415.2 |
AML vs MDS | Mills et al. 2009 | 164 vs 202 | 10975 | 15337 | 2881.5±1068.7 | 6017±1666.7 |