Software component | Docker image | Other software dependencies and settings included |
---|---|---|
hap.py v0.2.10 | sowmiu/happy | Ubuntu 14.04 |
Python 2.7.6, python2.7-dev, python-software-properties, cython, numpy, pandas, setuptools, pybedtools, pysam, bx-python, nose, pip, numpy, Distribute | ||
Cmake > 2.8, gcc/g++4.8 + zlib1g-dev, libncurses5-dev, bzip2, wget, libbz2-dev, build-essential, libatlas-base-dev, pkg-config, boost 1.55 + , software-properties-common | ||
git, samtools 0.1.19, bcftools 0.1.19, gfortran | ||
bcftools | vandhanak/bcftools:1.3.1 | Ubuntu 14.04 |
Make, g++, gcc, zlib1g-dev, libgsl0ldbl, gsl-bin, libgsl0-dev, libatlas-base-dev git, htslib 1.3.2 | ||
IndelSizeDistribution_Detailed.R | vandhanak/rbase:3.3.2 | Ubuntu 14.04 |
libcurl4-openssl-dev, libxml2-dev, locale setting: en_US.UTF-8 | ||
Set access to these repositories: trusty-backports, CRAN | ||
Benchmarking_truth_set.py | – | Python 2.7 |
Verify_variants.py | – | Python 2.7 |