Skip to main content

Table 1 Pearson correlation coefficient of metrics used for evaluation of predicted real-valued distances with TM-score and GDT-TS score, calculated on the PSICOV 150 protein dataset

From: DISTEVAL: a web server for evaluating predicted protein distances

Real-valued distance evaluation metric PCC* with TM-score PCC* with GDT-TS
Cb-LDDT of all medium and long-range distances 0.83 0.86
Cb-LDDT of all short, medium, and long-range distances 0.82 0.87
Cb-LDDT of all long-range distances 0.81 0.82
PCC* of all medium and long-range distances below 20 Å 0.77 0.79
MAE of all medium and long-range distances below 20 Å − 0.72 − 0.78
MAE of all long-range distances below 20 Å − 0.71 − 0.74
RMSE of all medium and long-range distances below 20 Å − 0.60 − 0.67
RMSE of all long-range distances below 20 Å − 0.60 − 0.64
  1. *Pearson correlation coefficient