|
Species
|
Chardonnay
|
Mosquito
|
Thorny Skated
|
|---|
|
Assembly type
|
No HapSoloa
|
HapSolo –HCb
|
HapSolo +HCc
|
No HapSolo
|
HapSolo −HC2
|
HapSolo +HC3
|
No HapSolo
|
HapSolo −HC
|
HapSolo +HC
|
|---|
|
# of Contigs
|
2072
|
1369
|
1155
|
1073
|
674
|
666
|
16,218
|
14,494
|
12,937
|
|
Contig assembly size (Mb)
|
655.2
|
569.3
|
539.0
|
212.0
|
200.4
|
200.0
|
3229.4
|
3147.8
|
3031.3
|
|
Largest contig (Mb)
|
11.6
|
11.6
|
11.6
|
7.6
|
7.6
|
7.6
|
3.4
|
3.4
|
3.4
|
|
Contig N50 (Mb)
|
1.1
|
1.3
|
1.4
|
0.6
|
0.7
|
0.7
|
0.4
|
0.4
|
0.5
|
|
Contig L50
|
141
|
106
|
95
|
86
|
77
|
77
|
2022
|
1928
|
1800
|
- aResults in this column are based on the primary assembly without application of HapSolo
- bResults in this column are based on application of HapSolo without hill climbing (−HC) and with default parameters of ID, Q and QR = 0.70
- cResults in this column are based on application of HapSolo with 50,000 cycles of hill climbing (+HC)
- dResults for HapSolo were generated using minimap2. Chardonnay and mosquito statistics are based on BLAT
