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Table 1 Contig assembly statistics for three primary assemblies for each of three species

From: HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

Species Chardonnay Mosquito Thorny Skated
Assembly type No HapSoloa HapSolo –HCb HapSolo +HCc No HapSolo HapSolo −HC2 HapSolo +HC3 No HapSolo HapSolo −HC HapSolo +HC
# of Contigs 2072 1369 1155 1073 674 666 16,218 14,494 12,937
Contig assembly size (Mb) 655.2 569.3 539.0 212.0 200.4 200.0 3229.4 3147.8 3031.3
Largest contig (Mb) 11.6 11.6 11.6 7.6 7.6 7.6 3.4 3.4 3.4
Contig N50 (Mb) 1.1 1.3 1.4 0.6 0.7 0.7 0.4 0.4 0.5
Contig L50 141 106 95 86 77 77 2022 1928 1800
  1. aResults in this column are based on the primary assembly without application of HapSolo
  2. bResults in this column are based on application of HapSolo without hill climbing (−HC) and with default parameters of ID, Q and QR = 0.70
  3. cResults in this column are based on application of HapSolo with 50,000 cycles of hill climbing (+HC)
  4. dResults for HapSolo were generated using minimap2. Chardonnay and mosquito statistics are based on BLAT