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Table 2 Starting and ending BUSCO values for the three species for primary contig assemblies

From: HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

  No HapSolo HapSolo (−HC) HapSolo (+HC)
Species GSa BUSCOb GS BUSCO GS BUSCO
Chardonnay 655.2 C:1357 569.3 C:1356 539.0 C:1357
S:1004 S:1152 S:1205
D:353 D:204 D:152
Mosquito 212.0 C:2640 200.4 C:2609 200.0 C:2621
S:2493 S:2548 S:2566
D:147 D:61 D:55
Thorny Skate 3229.4 C:2091 3147.8 C:2087 3031.3 C:2080
S:1651 S:1675 S:1715
D:440 D:412 D:365
  1. aGenome Size (GS) based on the sum of all contigs for the primary assembly
  2. bBusco based on all contigs prior to the application of HapSolo. The three values represent the complete (C), the single (S) and duplicated (D) BUSCO genes