Skip to main content

Table 2 Starting and ending BUSCO values for the three species for primary contig assemblies

From: HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

 

No HapSolo

HapSolo (−HC)

HapSolo (+HC)

Species

GSa

BUSCOb

GS

BUSCO

GS

BUSCO

Chardonnay

655.2

C:1357

569.3

C:1356

539.0

C:1357

S:1004

S:1152

S:1205

D:353

D:204

D:152

Mosquito

212.0

C:2640

200.4

C:2609

200.0

C:2621

S:2493

S:2548

S:2566

D:147

D:61

D:55

Thorny Skate

3229.4

C:2091

3147.8

C:2087

3031.3

C:2080

S:1651

S:1675

S:1715

D:440

D:412

D:365

  1. aGenome Size (GS) based on the sum of all contigs for the primary assembly
  2. bBusco based on all contigs prior to the application of HapSolo. The three values represent the complete (C), the single (S) and duplicated (D) BUSCO genes
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us