DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks

Table 2 The unified scores of DeepGRN and the top four algorithms in the DREAM Challenge

TF	Cell	Anchor	FactorNet	Cheburashka	Catchitt	DeepGRN
CTCF	PC-3	0.67	0.17	0.83	0.5	0.33
CTCF	induced pluripotent stem cell	0.83	0.33	0.67	0.5	0.17
E2F1	K562	0.5	0.83	0.67	0.17	0.33
EGR1	liver	0.17	0.83	0.67	0.33	0.5
FOXA1	liver	0.67	0.33	0.83	0.5	0.17
FOXA2	liver	0.33	0.83	0.67	0.5	0.17
GABPA	liver	0.33	0.83	0.67	0.5	0.17
HNF4A	liver	0.67	0.33	0.83	0.5	0.17
JUND	liver	0.17	0.83	0.67	0.5	0.33
MAX	liver	0.17	0.83	0.33	0.67	0.5
NANOG	induced pluripotent stem cell	0.33	0.5	0.83	0.67	0.17
REST	liver	0.67	0.33	0.83	0.5	0.17
TAF1	liver	0.17	0.5	0.67	0.33	0.83

ISSN: 1471-2105