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Fig. 2 | BMC Bioinformatics

Fig. 2

From: TopoFilter: a MATLAB package for mechanistic model identification in systems biology

Fig. 2

TopoFilter pseudo-code with an implementation outline. Note that, because of an option to re-sample and save viable points for all found projections, preparing points comes actually after the for\(I\in \mathcal {I}_{n-1}\) loop, in a separate for\(I\in \mathcal {I}_{n}\) loop, and during initialization. Parts in red highlight differences to the original algorithm [26] such as choice of enumeration level, custom scoring and threshold functions, automatic (tail) recursion, and adaptive resampling from whole (representative) sets of previous samples

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