TopoFilter: a MATLAB package for mechanistic model identification in systems biology

BMC Bioinformatics

Table 1 TopoFilter performance in finding the maximally reduced TOR signaling model

Enumeration level	Rank r	Success rate (%)			Time per run (min)
		n=10²	n=10³	n=10⁴	n=10²	n=10³	n=10⁴
Conservative (0)	1	80	100	100	4	19	154
	2	100	100	100	11	93	733
Balanced (1)	1	100	100	100 ∗	27	178	8’014 ∗
	2	100	100	100	44	215	5’096

Data are averages from five repeated runs on a single worker each, except for the case ∗ with four repeats

ISSN: 1471-2105