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Table 2 Methods Comparison in Two-Class Classification Tasks

From: Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery

MethodLassoRRFKnow-GRRF
prior 1prior 2prior both
Freq>50%StepwiseFreq>50%StepwiseFreq>50%Stepwise
Scenario 1
JI0.260.180.400.400.500.330.80a0.80a
TPR0.900.300.400.400.500.400.800.80
FPR0.270.080000.0300
FN101, 2, 3, 4, 7, 9, 104, 6, 7, 8, 9, 104, 6, 7, 8, 9, 101, 2, 3, 4, 51, 2, 3, 4, 5, 102, 44, 10
Scenario 2
JI0.380.190.470.550.500.300.600.80a
TPR0.800.400.700.600.500.300.600.80
FPR0.120.120.060.010000
FN3, 91, 2, 4, 7, 8, 97, 8, 94, 7, 8, 91, 2, 3, 4, 51, 2, 3, 4, 7, 8, 91, 3, 5, 91, 9
Scenario 3
JI0.310.270.400.270.500.300.500.90a
TPR1.000.400.400.300.500.300.500.90
FPR0.240.0600.010000
FN 1, 3, 5, 6, 7, 81, 6, 7, 8, 9, 101, 3, 6, 7, 8, 9, 101, 2, 3, 4, 51, 2, 3, 4, 7, 8, 91, 3, 4, 5, 73
  1. aindicates the best JI value in each scenario