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Table 2 Benchmark results of the brute-force, MOODS, PoSSuMsearch and the proposed BLAMM algorithm on a 36-core Intel Skylake architecture (node C) and on a dual GPU system for TFM-CUDA and BLAMM (GPU mode)

From: BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

  1. In all cases, the occurrences of 1404 JASPAR PWMs were searched on both strands of human chromosome 1 for two different p-values (10−5 and 10−4)