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Table 3 Benchmark results of the naive, MOODS, PoSSuMsearch and the proposed BLAMM algorithm on a 36-core Intel Skylake architecture (node C) and on a dual GPU system for BLAMM (GPU mode)

From: BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

  1. In all cases, the occurrences of 1404 JASPAR PWMs were searched on both strands of the entire human genome for three different p-values (10−6, 10−5 and 10−4)
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BMC Bioinformatics

ISSN: 1471-2105

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