Skip to main content

Table 2 Performance of ELMSI for longer micro-satellites classification

From: Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution

  Tumor purity  0.9  0.7  
No.BreakpointUnitμNμTBreakpointμTMSIBreakpointμTMSI
134489TCATT8612534491146.84134489163.441
2122387GGCC425525122389685.631122387724.231
3189108GCTAC46120189158105.651189108133.031
4190653CATC43136190655130.521190653170.211
5194236AAC89166194238145.931194236151.431
6251655GCT7111125165491.17125165571.711
7311313ACCA56236311315321.081311313331.601
8356789GCT7625635679051.471356789161.351
9398971TTCG45225398973213.121398971251.421
10412340G10028041250588.05141234070.501
11432344TGA78258432343177.301432344220.541
12473174AAGG221354473176462.751473174403.211
13501994CGCCG78161501996128.261501994329.521
14505733ACAGGG40111505791222.261505733248.281
15526358GTCC58144526360167.581526358152.301
16612344TGC90270612342355.321612344343.931
17622735GGTTC77142622737114.591622735197.751
18677621TCA70200677623163.891677621202.361
19712345GACT89269712337N/A0712345230.621
20731506GA146203731506104.14173150688.481
21776166TAA213324776167359.17431776166564.011
22842735CTC134211842734213.291842735236.041
23866450TG185220866450371.531866450526.35511
24891334TCAGC105285891336234.201891334338.381
25908385AGAAT167229908386194.851908385294.271
26910124C20530191020498.17191012432.501
27929056CCG120210929058199.721929056202.661
28944729GGACT90190944731214.331944729225.511
29964608AGGGGG56156964610305.591964608296.611
30973099GGGCAC355460973101849.181973099N/A0
     Accuracy 0.967  0.967
Tumor purity 0.5  0.3  0.1  
No.UnitBreakpointμTMSIBreakpointμTMSIBreakpointμTMS
1TCATT34491155.09134489165.59134489272.511
2GGCC122389354.081122387710.491122387619.041
3GCTAC189108177.331189108127.27118910894.681
4CATC190655137.45119065384.00119065319.351
5AAC194238172.941194236125.12119423682.571
6GCT25165486.32125165530.281251655N/A0
7ACCA311355240.461311313361.341311313509.081
8GCT356790303.441356789189.281356789584.241
9TTCG398973275.141398971282.361398971295.251
10G41248366.431412340105.091412340N/A0
11TGA432343292.881432344270.841432344345.931
12AAGG473176434.981473174640.551473174779.621
13CGCCG501996278.351501994365.001501994800.131
14ACAGGG505844246.031505733178.621505733339.871
15GTCC526361120.871526358132.081526358112.711
16TGC612419467.031612344570.021612344N/A0
17GGTTC622737215.571622735241.851622735254.751
18TCA677623226.321677621241.831677621220.821
19GACT712347393.391712345327.391712345N/A0
20GA73150677.51173150651.491731506N/A0
21TAA776167405.811776166170.121776166340.201
22CTC842734221.521842735321.371842735204.911
23TG866450485.101866450870.521866450236.771
24TCAGC891336316.811891334112.101891334677.121
25AGAAT908386206.391908385457.041908385152.631
26C910220N/A0910124N/A0910124N/A0
27CCG929058203.18192905698.561929056269.481
28GGACT944731257.571944729250.611944729279.331
29AGGGGG964610416.611964608380.031964608691.831
30GGGCAC9731011182.001973099N/A0973099748.711
  Accuracy 0.967  0.933  0.8
\