From: GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
Gap | Protein | Cath Code (0 = No value) | AVG Distance | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G1 | G2 | G3 | PDBs | Classification | Organism | C | A | T | H | ZN-Cys1 | ZN-Cys2 | ZN-His1 | ZN-His2 |
2 | 12 | 2 | 4 | TRANSCRIPTION (1), | HOMO SAPIENS (4) | 0(2) | 0(2) | 0(2) | 0(2) | 2.25 | 2.31 | 2.07 | 5.49 |
METAL BINDING | 3(1) | 30(1) | 40(1) | 200(1) | |||||||||
PROTEIN/DNA (1), | 3(1) | 30(1) | 160(1) | 60(1) | |||||||||
TRANSCRIPTION/DNA(1), | |||||||||||||
... | |||||||||||||
2 | 12 | 3 | 4 | TRANSCRIPTION (139), | HOMO SAPIENS (261), | 0(198) | 0(198) | 0(198) | 0(198) | 2.33 | 2.26 | 2.08 | 2.07 |
TRANSCRIPTION/DNA (91), | UNDEFINED (50), | 2(1) | 60(1) | 40(1) | 10(1) | ||||||||
GENE REGULATION/DNA (10), | MUS MUSCULUS (40), | 3(172) | 30(172) | 160(172) | 60(172) | ||||||||
UNKNOWN FUNCTION (5), | MUS (10), | 3(4) | 30(4) | 428(4) | 10(4) | ||||||||
... | ... | ||||||||||||
2 | 12 | 4 | 97 | TRANSCRIPTION (29), | MUS MUSCULUS (6), | 0(66) | 0(66) | 0(66) | 0 (66) | 2.30 | 2.24 | 2.05 | 2.05 |
TRANSCRIPTION/DNA (22), | HOMO SAPIENS (70), | 2(1) | 170(1) | 270(1) | 10(1) | ||||||||
METAL BINDING PROTEIN (7), | UNDEFINED (11), | 3(30) | 30(30) | 160(30) | 60(30) | ||||||||
... | ... | ||||||||||||
2 | 12 | 5 | 15 | TRANSCRIPTION (15), | HOMO SAPIENS (9), | 0(4) | 0(4) | 0(4) | 0(4) | 2.32 | 2.29 | 2.37 | 2.60 |
RNA BINDING | MUS MUSCULUS (1), | 1(1) | 10(1) | 10(1) | 790(1) | ||||||||
PROTEIN RNA (1), | XENOPUS LAEVIS (2), | 3(10) | 30(10) | 160(10) | 60(10) | ||||||||
... | ... | ||||||||||||
3 | 12 | 4 | 1 | METAL BINDING PROTEIN (1) | HOMO SAPIENS (1) | 0(1) | 0(1) | 0(1) | 0(1) | 6.00 | 1.72 | 1.94 | 2.32 |
3 | 12 | 5 | 2 | RNA BINDING PROTEIN (69), | XENOPUS LAEVIS (1), | 2(1) | 30(1) | 170(1) | 10(1) | 5.60 | 3.15 | 3.60 | 4.29 |
METAL BINDING PROTEIN (1) | SYNECHOCOCCUS | 3(1) | 30(1) | 160(1) | 60(1) | ||||||||
ELONGATUS (1) | |||||||||||||
4 | 12 | 3 | 117 | TRANSCRIPTION DNA (69), | HOMO SAPIENS (63), | 0(42) | 0(42) | 0(42) | 0(42) | 2.28 | 2.30 | 2.07 | 2.04 |
TRANSCRIPTION | MUS MUSCULUS (19), | 3(75) | 30(75) | 160(75) | 60(75) | ||||||||
FACTOR/DNA (6), | ESCHERICHIA COLI (2), | ||||||||||||
... | ... | ||||||||||||
4 | 12 | 4 | 8 | METAL BINDING PROTEIN (1), | HOMO SAPIENS (3), | 0(4) | 0(4) | 0(4) | 0(4) | 2.26 | 2.26 | 2.07 | 2.14 |
PROTEIN BINDING (1), | ARABIDOPSIS | 3(4) | 30(4) | 160(4) | 60(4) | ||||||||
DNA BINDING PROTEIN (2), | THALIANA (1), | ||||||||||||
... | ... | ||||||||||||
4 | 12 | 6 | 2 | TRANSLATION | HOMO SAPIENS (2) | 3(2) | 30(2) | 40(2) | 130(2) | 2.13 | 2.13 | 1.99 | 6.95 |
REGULATOR (1), | |||||||||||||
METAL BINDING PROTEIN (1) | |||||||||||||
630 | 2.33 | 2.26 | 2.08 | 2.12 |