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Table 4 Survival prediction: top score pathways sampled by the different algorithms

From: Robust pathway sampling in phenotype prediction. Application to triple negative breast cancer

FRS

HS

Score

Top Pathways

Score

Top Pathways

9.87

Integrin Pathway

13.54

Integrin Pathway

8.96

Fatty Acid Beta-oxidation (peroxisome)

11.30

Sweet Taste Signaling

7.94

DREAM Repression &Dynorphin Expression

11.28

DREAM Repression &Dynorphin Expression

7.88

Signaling Events Mediated By HDAC Class II

11.13

RhoA Signaling Pathway

7.54

Type II Interferon Signaling (IFNG)

9.58

Signaling Events Mediated By HDAC Class II

7.19

Fatty Acid Biosynthesis (KEGG)

9.40

Androgen Receptor Signaling Pathway

6.93

Fatty Acyl-CoA Biosynthesis

9.39

CCR5 Pathway in Macrophages

RS

BN

Score

Top Pathways

Score

Top Pathways

9.90

TCR Signaling

7.87

Nucleotide-binding Domain, NLR Signaling

9.79

Androgen Receptor Signaling Pathway

7.39

Apoptosis and Autophagy

9.48

Presenilin-Mediated Signaling

7.20

C-MYC Transcriptional Repression

8.57

Ovarian Infertility Genes

6.82

NF-kB (NFkB) Pathway

8.34

DNA Damage Response (ATM Dependent)

6.19

Apoptosis Modulation and Signaling

8.14

Apoptotic Pathways in Synovial Fibroblasts

6.13

Apoptosis and Survival Caspase Cascade

8.02

Sweet Taste Signaling

5.69

Senescence and Autophagy in Cancer

  1. Bold faces highlights the common pathways