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Table 1 Transcriptomics data sources

From: A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells

ID Experiment design Experimental Organism Contributor
tolerogenic_DC Tolerogenic DC Homo Sapiens T Nikolic et al. [13]
GSE17721 Tolerogenic DC Mus Musculus I Amit et al. [14]
GSE18921 Tolerogenic DC Homo Sapiens H Torres-Aguilar et al. [15]
GSE5099 Monocytes differentiation Homo Sapiens FO Martinez et al. [16]
GSE8286 Monocytes differentiation Homo Sapiens H Liu et al. [17]
GSE111475 B cell activation Homo Sapiens K Miyawaki et al.
GSE116999 B cell activation Homo Sapiens DT Avery et al. [18]
GSE51587 B cell activation Homo Sapiens LJ Berglund et al. [19]
GSE54017 B cell activation Homo Sapiens A Shimabukuro-Vornhagen et al. [20]
GSE29797 T cell activation Mus Musculus Yang K et al. [21]
GSE112899 T cell activation Homo Sapiens Sousa IG et al. [22]
GSE60235 T cell activation Homo Sapiens Ye CJ et al. [23]
GSE73213 T cell activation Homo Sapiens LaMere SA et al. [24, 25]
GSE111789 Eosinophils cytokine response Homo Sapiens Khoury P et al. & Gadkari M et al. [26, 27]
GSE112010 Eosinophils cytokine response Mus Musculus Fairfax KA et al. [28]
GSE128027 Eosinophils cytokine response Homo Sapiens Nelson RK et al. [29]
GSE104152 Naive to Th17 differentiation Mus Musculus Mohammad I et al. [30]
GSE113889 Naive to Th17 differentiation Homo Sapiens Tangye S et al. (Accession: GSE113889)
GSE118974 Naive to Th17 differentiation Homo Sapiens Tripathi SK et al. [31]
GSE140443 Naive to Th17 differentiation Mus Musculus Gehrmann U et al. (Accession: GSE140443)
GSE110446 NK IL12 Homo Sapiens Costanzo MC et al. [32]
GSE24791 NK IL12 Homo Sapiens Campbell AR et al. [33]
GSE63038 NK IL12 Homo Sapiens de Carvalho EG et al. (Accession: GSE63038)
GSE87290 PBMC LPS Homo Sapiens Lin J et al. [34]
GSE22248 PBMC LPS Homo Sapiens Pena OM et al. [35]
GSE9916 PBMC LPS Homo Sapiens Wong HR et al. [36]
GSE101710 Negative data Homo Sapiens Zapata HJ et al. [37]
GSE110223 Negative data Homo Sapiens Vlachavas EI et al. [38]
GSE21045 Negative data Homo Sapiens Landolin JM et al. [39]
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BMC Bioinformatics

ISSN: 1471-2105

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