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Table 1 Transcriptomics data sources

From: A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells

ID

Experiment design

Experimental Organism

Contributor

tolerogenic_DC

Tolerogenic DC

Homo Sapiens

T Nikolic et al. [13]

GSE17721

Tolerogenic DC

Mus Musculus

I Amit et al. [14]

GSE18921

Tolerogenic DC

Homo Sapiens

H Torres-Aguilar et al. [15]

GSE5099

Monocytes differentiation

Homo Sapiens

FO Martinez et al. [16]

GSE8286

Monocytes differentiation

Homo Sapiens

H Liu et al. [17]

GSE111475

B cell activation

Homo Sapiens

K Miyawaki et al.

GSE116999

B cell activation

Homo Sapiens

DT Avery et al. [18]

GSE51587

B cell activation

Homo Sapiens

LJ Berglund et al. [19]

GSE54017

B cell activation

Homo Sapiens

A Shimabukuro-Vornhagen et al. [20]

GSE29797

T cell activation

Mus Musculus

Yang K et al. [21]

GSE112899

T cell activation

Homo Sapiens

Sousa IG et al. [22]

GSE60235

T cell activation

Homo Sapiens

Ye CJ et al. [23]

GSE73213

T cell activation

Homo Sapiens

LaMere SA et al. [24, 25]

GSE111789

Eosinophils cytokine response

Homo Sapiens

Khoury P et al. & Gadkari M et al. [26, 27]

GSE112010

Eosinophils cytokine response

Mus Musculus

Fairfax KA et al. [28]

GSE128027

Eosinophils cytokine response

Homo Sapiens

Nelson RK et al. [29]

GSE104152

Naive to Th17 differentiation

Mus Musculus

Mohammad I et al. [30]

GSE113889

Naive to Th17 differentiation

Homo Sapiens

Tangye S et al. (Accession: GSE113889)

GSE118974

Naive to Th17 differentiation

Homo Sapiens

Tripathi SK et al. [31]

GSE140443

Naive to Th17 differentiation

Mus Musculus

Gehrmann U et al. (Accession: GSE140443)

GSE110446

NK IL12

Homo Sapiens

Costanzo MC et al. [32]

GSE24791

NK IL12

Homo Sapiens

Campbell AR et al. [33]

GSE63038

NK IL12

Homo Sapiens

de Carvalho EG et al. (Accession: GSE63038)

GSE87290

PBMC LPS

Homo Sapiens

Lin J et al. [34]

GSE22248

PBMC LPS

Homo Sapiens

Pena OM et al. [35]

GSE9916

PBMC LPS

Homo Sapiens

Wong HR et al. [36]

GSE101710

Negative data

Homo Sapiens

Zapata HJ et al. [37]

GSE110223

Negative data

Homo Sapiens

Vlachavas EI et al. [38]

GSE21045

Negative data

Homo Sapiens

Landolin JM et al. [39]