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Table 3 A comparison of the contingency table for Concordance Fisher’s Exact (above) and Fisher’s Exact Overrepresentation (below)

From: A comparison of curated gene sets versus transcriptomics-derived gene signatures for detecting pathway activation in immune cells

  Genes matched in regulation direction Genes not matched in regulation direction Total
In signature x mx m
Not in signature kx n−(kx) n
Total k m+nk m+n
  Differentially expressed genes Not differentially expressed genes Total
In signature x mx m
Not in signature kx n−(kx) n
Total k m+nk m+n