Table 2 Studies used for validation of fragment abundance distributions including the isolates reported in the study, NCBI accessions used to download the genomes, and the stable isotopes simulated
From: Simulating metagenomic stable isotope probing datasets with MetaSIPSim
Study | Isolates (NCBI accession) | Isotope(s) | Original publication figure |
|---|---|---|---|
Lueders et al. 2004 | Methanosarcina barkeri MS (CP009528.1) | 12C | 1A |
Methylobacterium extorquens AM1 (NC_012808.1) | 13C | ||
Buckley et al. 2007 | Escherichia coli K12 (NC_000913.3) | 14N, 15N | 2 |
Pseudomonas aeruginosa PAO1 (NC_002516.2) | 14N | ||
Wawrik et al. 2009 | Synechococcus sp. WH7803 (NC_009481.1) | 14N, 15N | 3B |