From: Simulating metagenomic stable isotope probing datasets with MetaSIPSim
Comm. G + C | # Labeled genomes per sample | Buoyant Density window g/ml | \( \overset{\sim }{\Delta } \) Read coverage X (p-value) | \( \overset{\sim }{\Delta } \) Proportion of genome recovered in reads (p-value) | \( \overset{\sim }{\Delta } \) Proportion of genome recovered in contigs (p-value) | \( \overset{\sim }{\Delta } \) NGA50 bp (p-value) | \( \overset{\sim }{\Delta } \) Proportion of genome recovered in best bin (p-value) | \( \overset{\sim }{\Delta } \) Proportion bin contaminated (p-value) |
---|---|---|---|---|---|---|---|---|
Low | 25 | 1.72–1.77 | 2.202 (<  0.001) | 0.445 (<  0.001) | 0.058 (0.027) | 18,409 (<  0.001) | 0.675 (<  0.001) | −0.007 (NS) |
50 | 1.769 (<  0.001) | 0.391 (<  0.001) | 0.052 (< 0.001) | 19,672 (<  0.001) | 0.567 (<  0.001) | −0.038 (<  0.001) | ||
100 | 1.188 (<  0.001) | 0.324 (<  0.001) | 0.006 (NS) | 7779 (<  0.001) | 0.337 (<  0.001) | −0.010 (<  0.001) | ||
High | 50 | 1.70–1.75 | 0.018 (NS) | 0.013 (NS) | −0.032 (NS) | − 212 (NS) | 0.019 (NS) | −0.001 (NS) |
1.72–1.77 | 0.589 (<  0.001) | 0.241 (<  0.001) | 0.026 (NS) | 3824 (<  0.001) | 0.330 (<  0.001) | −0.017 (0.006) | ||
1.75–1.79 | 3.935 (<  0.001) | 0.388 (<  0.001) | 0.102 (0.013) | 47,027 (<  0.001) | 0.825 (<  0.001) | −0.012 (NS) |