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Table 5 Comparison with related work on the PNER subtask

From: Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes

SystemStrict MatchOverlap Match
PRF1PRF1
Sheng et al. [28]0.5090.6130.5560.6860.8260.749
Kaewphan et al. [29]0.7290.7390.7340.8250.8360.831
Kaewphan et al. [30]0.7640.7680.766
Ours0.8150.8120.8140.8730.8690.871
  1. Strict match criteria require that the predicted entity and the gold standard annotations have to match exactly at the byte offset; and overlap match criteria allows a match if the predicted entity overlaps with the gold annotation at all. The highest scores are highlighted in bold.