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Table 5 Comparison with related work on the PNER subtask

From: Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes

System

Strict Match

Overlap Match

P

R

F1

P

R

F1

Sheng et al. [28]

0.509

0.613

0.556

0.686

0.826

0.749

Kaewphan et al. [29]

0.729

0.739

0.734

0.825

0.836

0.831

Kaewphan et al. [30]

0.764

0.768

0.766

Ours

0.815

0.812

0.814

0.873

0.869

0.871

  1. Strict match criteria require that the predicted entity and the gold standard annotations have to match exactly at the byte offset; and overlap match criteria allows a match if the predicted entity overlaps with the gold annotation at all. The highest scores are highlighted in bold.