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Table 1 The top 5 genome assemblies with the smallest distance, 20 randomly selected genome assemblies, and the bottom 5 genome assemblies with the largest distance

From: Toward a more holistic method of genome assembly assessment

Species N50 num_contigs complete duplicate distance
Oryzias latipes 31200000 24 95.70 1.00 4.41
Oryzias latipes 32840000 24 94.50 1.00 5.59
Oryzias latipes 28850000 24 92.00 1.10 8.08
Macaca fascicularis 133600000 21 89.90 1.00 10.15
Homo sapiens 149700000 24 90.00 1.10 10.89
Falco peregrinus 88200000 34 94.00 0.30 27.14
Seriola quinqueradiata 5609355 384 95.90 1.00 93.84
Dromaius novaehollandiae 3317187 2777 97.50 0.40 98.59
Homo sapiens 30940000 2416 93.50 1.40 99.27
Homo sapiens 8420670 3103 92.80 1.40 99.53
Mus caroli 111200000 3162 93.50 1.80 99.60
Falco peregrinus 3918221 7020 97.30 0.30 99.68
Equus asinus 15030000 9021 95.60 0.60 99.76
Phascolarctos cinereus 11590000 1906 91.90 1.40 99.92
Homo sapiens 142200000 6505 92.00 1.20 99.97
Camelus bactrianus 8738935 35454 95.20 0.90 100.01
Mus musculus 6370149 9129 93.30 1.60 100.02
Homo sapiens 19360000 11138 93.20 1.40 100.03
Homo sapiens 5550336 10430 92.80 1.40 100.05
Serinus canaria 19890000 304399 96.50 0.40 100.05
Desmodus rotundus 26190000 29800 94.30 0.90 100.12
Sarcophilus harrisii 1770155 35974 89.60 1.40 100.53
Homo sapiens 195564 858918 86.10 1.30 100.97
Gadus morhua 258723 427427 60.60 0.90 107.48
Ovis aries 43840000 1217 38.10 0.30 115.73
Homo sapiens 16130000 43100 11.40 79.70 155.54
Homo sapiens 18070000 47409 11.10 80.00 155.86
Acinonyx jubatus 48410000 6438 8.70 85.90 160.17
Salvelinus alpinus 41440000 10 29.40 1.70 308.20
Xiphophorus hellerii 27850000 4 18.50 0.70 506.60
  1. Duplicate species in the table represent various genome assemblies uploaded to NCBI