Table 2 ID dataset - Description of the attributes
Type | Feature | Description |
|---|---|---|
Disease | name | Disease name |
mesh_disease_class | Disease classification by Medical Subject Headings (MeSH) | |
umls_semantic_type | Semantic type provided by the Unified Medical Language System | |
Disease_ncRNA | id | ID of the relationship |
ncrna | ncRNA involved in the association | |
disease | Disease involved in the association | |
type | Type of association | |
detection | Method used to detect the relationship | |
year | Year of the detection | |
descr | Description of the association | |
chromosome | Chromosome | |
refseq | RefSeq identifier | |
pmid | PubMed ID of the publication reporting the association | |
Disease_target | id | ID of the relationship |
target | Target gene involved in the association | |
disease | Disease involved in the association | |
score | DisGENET score for the Gene-Disease association | |
source | Original source reporting the Gene-Disease association | |
num_pmid | Total number of publications reporting the association | |
num_snp | Total number of SNPs associated to the association | |
cui | Concept Unique Identifier (CUI) | |
lncRNA_miRNA | id | ID of the relationship |
mirna | miRNA involved in the association | |
lncrna | lncRNA involved in the association | |
ncRNA | name | ncRNA name |
biotype | Type of ncRNA. The value can be “lncrna” or “mirna” | |
ncRNA_target | id | ID of the relationship |
ncrna | ncRNA involved in the association | |
target | Target genes involved in the association | |
interaction | Elements involved in the associations (e.g. RNA-RNA, RNA-protein) | |
inter_type | Type of interaction (e.g. Regulatory, Binding, etc.) | |
description | Description of the interaction | |
refseq | RefSeq identifier | |
pmid | PubMed ID of the publication reporting the association | |
pubdate | Date of first publication | |
reference | Textual description of the association | |
Target | name | Name of target gene |