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Table 2 ID dataset - Description of the attributes

From: Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering

TypeFeatureDescription
DiseasenameDisease name
 mesh_disease_classDisease classification by Medical Subject Headings (MeSH)
 umls_semantic_typeSemantic type provided by the Unified Medical Language System
Disease_ncRNAidID of the relationship
 ncrnancRNA involved in the association
 diseaseDisease involved in the association
 typeType of association
 detectionMethod used to detect the relationship
 yearYear of the detection
 descrDescription of the association
 chromosomeChromosome
 refseqRefSeq identifier
 pmidPubMed ID of the publication reporting the association
Disease_targetidID of the relationship
 targetTarget gene involved in the association
 diseaseDisease involved in the association
 scoreDisGENET score for the Gene-Disease association
 sourceOriginal source reporting the Gene-Disease association
 num_pmidTotal number of publications reporting the association
 num_snpTotal number of SNPs associated to the association
 cuiConcept Unique Identifier (CUI)
lncRNA_miRNAidID of the relationship
 mirnamiRNA involved in the association
 lncrnalncRNA involved in the association
ncRNAnamencRNA name
 biotypeType of ncRNA. The value can be “lncrna” or “mirna”
ncRNA_targetidID of the relationship
 ncrnancRNA involved in the association
 targetTarget genes involved in the association
 interactionElements involved in the associations (e.g. RNA-RNA, RNA-protein)
 inter_typeType of interaction (e.g. Regulatory, Binding, etc.)
 descriptionDescription of the interaction
 refseqRefSeq identifier
 pmidPubMed ID of the publication reporting the association
 pubdateDate of first publication
 referenceTextual description of the association
TargetnameName of target gene