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Table 6 AUTPR@k computed using the new associations introduced in the new version of HMDD v3.2 as ground truth

From: Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering

  

AUC TPR@k

LP-HCLUS-NoLP

0.00000

ncPred

0.01448

LP-HCLUS AVG

Level 1

0.01754

 

Level 2

0.02663

 

Level 3

0.01453

LP-HCLUS MAX

Level 1

0.03247

 

Level 2

0.03423

 

Level 3

0.03111

LP-HCLUS MIN

Level 1

0.01846

 

Level 2

0.02197

 

Level 3

0.00962

LP-HCLUS EC

Level 1

0.00695

 

Level 2

0.00527

 

Level 3

0.00548

HOCCLUS2 AVG

Level 1

0.01750

 

Level 2

0.00627

 

Level 3

0.00962

HOCCLUS2 MAX

Level 1

0.01774

 

Level 2

0.00763

 

Level 3

0.00991

HOCCLUS2 MIN

Level 1

0.01657

 

Level 2

0.00627

 

Level 3

0.00962

HOCCLUS2 EC

Level 1

0.01689

 

Level 2

0.01269

 

Level 3

0.01252

  1. The best result is highlighted in boldface.