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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Analyses on clustering of the conserved residues at protein-RNA interfaces and its application in binding site identification

Fig. 5

Representative examples of protein interfaces showing the clustering characteristics of evolutionary conserved residues. Protein is shown in CPK (grey), the conserved residues are in green and non-conserved ones in blue. (a) The SXL-UNR translation regulatory complex (PDB code: 4qqb). In the first panel, RNA is in yellow and in the other two, it is removed to clearly show the clustering property of the conserved residues. (b) The prolyl-tRNA synthetase from thermus thermophilus complexed with tRNA (PDB code: 1h4q). (c) The ribosomal protein s8-rRNA complex (PDB code: 1i6u). (d) The bacterial protein-RNA toxin-antitoxin system (PDB code: 4rmo). (e) The human adenosine bound to dsRNA (PDB code: 5ed2)

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