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Table 3 Details of hyperparameters for DR-A based on the experimental results in Table 2. We carried out the experiments using the Rosenberg-156 k, Zheng-73 k, Zheng-68 k, Macosko-44 k, and Zeisel-3 k datasets. The DR-A algorithm was investigated with (a) 2 latent dimensions (K = 2), (b) 10 latent dimensions (K = 10), and (c) 20 latent dimensions (K = 20). G denotes a generative model and D denotes a discriminative model

From: A deep adversarial variational autoencoder model for dimensionality reduction in single-cell RNA sequencing analysis

Dataset

Batch size

Hidden layer

Hidden unit

Learning rate

(a) K = 2

 Rosenberg-156 k

128

4

G: 1024/512/512/256

D: 32/16/16/8

7 × 10−5

 Zheng-73 k

128

3

G: 512/512/512

D: 32/32/32

6 × 10−5

 Zheng-68 k

128

4

G: 256/256/256/256

D: 32/32/16/16

0.0001

 Macosko-44 k

128

3

G: 256/128/64

D: 64/64/64

0.0001

 Zeisel-3 k

128

4

G: 512/512/512/512

D: 32/32/32/32

8 × 10−4

(b) K = 10

 Rosenberg-156 k

128

4

G: 512/256/128/64

D: 256/128/64/32

6 × 10−5

 Zheng-73 k

128

4

G: 1024/512/512/256

D: 32/32/32/32

2 × 10−5

 Zheng-68 k

128

4

G: 256/256/256/256

D: 32/32/16/16

7 × 10−5

 Macosko-44 k

128

4

G: 512/256/256/128

D: 256/128/128/64

7 × 10−5

 Zeisel-3 k

128

1

G: 512

D: 512

7 × 10−4

(c) K = 20

 Rosenberg-156 k

128

4

G: 1024/1024/1024/1024

D: 64/64/64/64

6 × 10−5

 Zheng-73 k

128

4

G: 1024/512/512/256

D: 64/32/32/16

1 × 10−5

 Zheng-68 k

128

1

G: 256

D: 256

2 × 10−5

 Macosko-44 k

128

1

G: 256

D: 256

7 × 10−5

 Zeisel-3 k

128

1

G: 512

D: 512

7 × 10−4