From: Comparative study of whole exome sequencing-based copy number variation detection tools
Requirements | Recommendation | |
---|---|---|
Accuracy first | CNV size is small(< 100 kb) | CNVkit |
CNV size is large | cn.MOPS | |
More insertion | CoNIFER | |
More deletion | CNVkit | |
No prior knowledge | cn.MOPS+CoNIFER | |
Others | Speed first | cn.MOPS |
Low- memory | CoNIFER |