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Table 1 The recommended tool for different requirements

From: Comparative study of whole exome sequencing-based copy number variation detection tools

Requirements

Recommendation

Accuracy first

CNV size is small(< 100 kb)

CNVkit

CNV size is large

cn.MOPS

More insertion

CoNIFER

More deletion

CNVkit

No prior knowledge

cn.MOPS+CoNIFER

Others

Speed first

cn.MOPS

Low- memory

CoNIFER