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Table 5 Quantification results for the Klyo samples using the reference dataset AFS20 and the average result for AFS31RS90

From: A big data approach to metagenomics for all-food-sequencing

DatasetClassifierCattlePigW.Buf.GoatChickenTurkeyΣ FPΣ Dev
KLyo_AExpected14.0%80.0%0.00%0.00%0.50%5.50%  
 AFS-MC16.6%71.5%0.04%0.02%0.60%4.64%0.28%12.39%
 MCSpark16.9%71.2%0.04%0.02%0.60%4.64%0.32%12.99%
 CLARK16.4%70.4%0.20%0.09%0.62%4.61%0.51%13.55%
 Kraken215.9%70.0%0.27%0.11%0.65%4.59%0.87%13.82%
 K2+Brack17.6%70.3%0.30%0.14%0.66%4.63%0.97%15.33%
KLyo_BExpected36.0%58.0%0.00%0.00%2.00%4.00%  
 AFS-MC37.6%51.0%0.12%0.04%2.05%2.99%0.50%10.16%
 MCSpark37.9%50.5%0.12%0.04%2.06%3.02%0.60%11.11%
 CLARK35.9%50.4%0.47%0.19%2.10%3.01%1.03%9.84%
 Kraken234.5%49.9%0.68%0.24%2.12%2.99%1.57%12.11%
 K2+Brack39.1%50.2%0.32%0.78%2.15%3.02%1.84%13.93%
KLyo_CExpected58.0%36.0%0.00%0.00%4.00%2.00%  
 AFS-MC57.7%27.1%0.16%0.06%3.56%1.16%0.95%11.47%
 MCSpark57.7%26.9%0.16%0.06%3.63%1.18%0.95%11.48%
 CLARK54.1%25.9%0.69%0.29%3.58%1.16%1.88%17.11%
 Kraken252.2%25.7%0.95%0.36%3.57%1.17%2.58%19.94%
 K2+Brack58.6%25.8%1.07%0.46%3.60%1.18%2.89%14.90%
KLyo_DExpected80.0%14.0%0.00%0.00%5.50%0.50%  
 AFS-MC74.7%10.9%0.23%0.08%4.66%0.33%0.93%10.27%
 MCSpark74.7%10.8%0.23%0.08%4.69%0.33%1.09%10.58%
 CLARK70.8%10.8%0.94%0.39%4.73%0.35%1.94%15.27%
 Kraken268.0%10.7%1.26%0.48%4.70%0.36%2.42%18.62%
 K2+Brack77.6%10.8%1.45%0.62%4.76%0.36%2.87%9.35%
AverageAFS-MC  0.14%0.05%  0.67%11.07%
 MCSpark  0.14%0.05%  0.74%11.54%
 CLARK  0.58%0.24%  1.34%13.94%
 Kraken2  0.79%0.30%  1.86%16.12%
 K2+Brack  0.71%0.50%  2.14%13.38%
AFS31RS90AFS-MC      0.58%13.97%
AverageMCSpark      0.59%14.08%
  1. AFS-MC: AFS-MetaCache, MC-Spark: MetaCacheSpark, K2+Brack: Kraken2 with subsequent Bracken, W.Buf: Water Buffalo, Σ FP: Sum of all false positive read classifications, Σ Dev: Sum of absolute deviations to the given meat composition (best results for each dataset in bold)