From: A big data approach to metagenomics for all-food-sequencing
Dataset | Classifier | Cattle | Sheep | Pig | Horse | W.Buf. | Goat | Σ FP | Σ Dev |
---|---|---|---|---|---|---|---|---|---|
Kal_A | Expected | 1.00% | 9.0% | 35.0% | 55.0% | 0.00% | 0.00% | ||
AFS-MC | 1.25% | 11.0% | 30.5% | 54.1% | 0.01% | 0.29% | 0.42% | 8.13% | |
MCSpark | 1.27% | 11.1% | 30.3% | 54.1% | 0.01% | 0.29% | 0.45% | 8.42% | |
CLARK | 1.29% | 9.1% | 31.1% | 54.0% | 0.09% | 0.89% | 1.15% | 6.43% | |
Kraken2 | 1.23% | 8.7% | 30.9% | 53.9% | 0.08% | 0.96% | 1.31% | 6.99% | |
K2+Brack | 1.43% | 10.3% | 31.0% | 54.0% | 0.10% | 1.12% | 1.53% | 8.24% | |
Kal_B | Expected | 9.0% | 1.00% | 55.0% | 35.0% | 0.00% | 0.00% | ||
AFS-MC | 10.5% | 1.42% | 49.3% | 35.6% | 0.03% | 0.06% | 0.27% | 8.43% | |
MCSpark | 10.6% | 1.42% | 49.1% | 35.7% | 0.03% | 0.06% | 0.30% | 8.92% | |
CLARK | 10.3% | 1.26% | 50.0% | 35.8% | 0.17% | 0.18% | 0.56% | 7.85% | |
Kraken2 | 10.0% | 1.21% | 49.6% | 35.7% | 0.20% | 0.20% | 1.03% | 8.40% | |
K2+Brack | 11.0% | 1.40% | 35.8% | 49.7% | 0.22% | 0.23% | 1.09% | 9.60% | |
Kal_C | Expected | 25.0% | 25.0% | 25.0% | 25.0% | 0.00% | 0.00% | ||
AFS-MC | 23.3% | 29.6% | 19.2% | 23.0% | 0.06% | 0.73% | 1.08% | 15.28% | |
MCSpark | 23.5% | 29.6% | 19.0% | 22.9% | 0.06% | 0.73% | 1.18% | 15.32% | |
CLARK | 23.4% | 25.6% | 19.4% | 23.2% | 0.45% | 2.56% | 3.38% | 12.98% | |
Kraken2 | 22.7% | 24.7% | 19.4% | 23.1% | 0.49% | 2.69% | 3.48% | 13.65% | |
K2+Brack | 24.8% | 27.8% | 19.4% | 23.2% | 0.54% | 3.02% | 3.89% | 14.35% | |
Kal_D | Expected | 35.0% | 55.0% | 9.00% | 1.00% | 0.00% | 0.00% | ||
AFS-MC | 32.9% | 51.5% | 7.14% | 1.14% | 0.09% | 1.50% | 2.07% | 9.62% | |
MCSpark | 33.2% | 51.2% | 7.03% | 1.13% | 0.09% | 1.49% | 2.23% | 9.91% | |
CLARK | 32.8% | 43.1% | 7.31% | 1.16% | 0.72% | 4.40% | 5.69% | 21.61% | |
Kraken2 | 31.6% | 41.3% | 7.26% | 1.16% | 0.79% | 4.62% | 5.77% | 24.75% | |
K2+Brack | 35.8% | 48.4% | 7.28% | 1.16% | 0.89% | 5.40% | 6.70% | 15.96% | |
Kal_E | Expected | 55.0% | 35.0% | 1.00% | 9.00% | 0.00% | 0.00% | ||
AFS-MC | 50.4% | 33.7% | 0.99% | 7.80% | 0.12% | 0.96% | 1.52% | 8.55% | |
MCSpark | 50.7% | 33.4% | 0.97% | 7.73% | 0.12% | 0.95% | 1.66% | 8.82% | |
CLARK | 50.7% | 28.7% | 1.02% | 7.81% | 0.84% | 3.07% | 4.43% | 16.26% | |
Kraken2 | 49.2% | 27.6% | 1.00% | 7.80% | 0.99% | 3.28% | 4.58% | 18.96% | |
K2+Brack | 54.1% | 31.4% | 1.00% | 7.81% | 1.10% | 3.71% | 5.15% | 10.86% | |
KAL_D | Expected | 35.0% | 55.0% | 9.00% | 1.00% | 0.00% | 0.00% | ||
AFS-MC | 30.3% | 49.6% | 7.27% | 1.16% | 0.08% | 1.25% | 1.38% | 13.36% | |
MCSpark | 30.4% | 49.5% | 7.25% | 1.16% | 0.08% | 1.26% | 1.36% | 13.36% | |
CLARK | 30.8% | 43.3% | 7.51% | 1.20% | 0.86% | 4.57% | 6.30% | 23.85% | |
Kraken2 | 29.6% | 41.3% | 7.47% | 1.19% | 0.95% | 4.98% | 7.03% | 27.86% | |
K2+Brack | 33.5% | 48.7% | 7.58% | 1.19% | 1.08% | 5.84% | 8.07% | 17.44% | |
Average | AFS-MC | 0.07% | 0.80% | 1.12% | 10.56% | ||||
MCSpark | 0.07% | 0.80% | 1.20% | 10.79% | |||||
CLARK | 0.51% | 2.61% | 3.59% | 14.83% | |||||
Kraken2 | 0.58% | 2.79% | 3.87% | 16.77% | |||||
K2+Brack | 0.66% | 3.22% | 4.41% | 12.74% | |||||
AFS31RS90 | AFS-MC | 1.84% | 13.38% | ||||||
Average | MCSpark | 1.84% | 13.63% |