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Table 1 Alignment runtime of three datasets

From: RASflow: an RNA-Seq analysis workflow with Snakemake

Dataset

Number of samples

Size of raw data (GB)

Runtime of alignment (HH:MM)

   

Transcriptome as reference

Genome as reference

Cod

47

244

05:32

69:18

Human

28

137

03:14

20:03

Benchmark

32

36

02:37

11:22

Mouse

8

9.3

00:28

03:46

Mouse_pc ∗

8

9.3

01:11

19:31

  1. *This was run on a personal computer