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Table 2 Mean accuracies of classifying different types of reads for the V3-V5 primer pair

From: Joining Illumina paired-end reads for classifying phylogenetic marker sequences

ReadRDP50RDP80SINTAX50SINTAX80TOPBTOP
r155.149.3454.1243.952.0252.02
dj59.3457.959.8246.455.0853.46
djref59.3257.9260.0846.5454.9454.04
io59.3857.3459.546.24053.08
ioref59.5257.759.5646.3654.9454.86
  1. Three types of reads, first (r1), directly joined (dj), and inside-out (io) reads, were classified to the genus level by six classification methods using MiSeq 2 × 300 bp data. The directly joined and inside-out reads were also compared to the corresponding rearranged references (djref and ioref) respectively for classification