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Table 1 Feature comparison of GOMCL and other tools for clustering of GO terms

From: GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

 

GOMCL

Enrichment Map [10]

ClueGO [12]

DAVID [25]

POSOC [26]

Clustering

Yes

Yes

Yes

Yes

Yes

Clustering basis

Jaccard Coefficient/Overlap Coefficient

Jaccard Coefficient/Overlap Coefficient

Kappa statistics

Kappa statistics

GO hierarchical distance

Clustering method

Markov Clustering (MCL) algorithm

Visual identification

Iterative merging

Iterative merging

Ranking

Sub-clustering

Yes

No

No

No

No

Type of visualization support

Network and Hierarchy

Network

Network

Table

Table

Compatible with other enrichment tools

Yes

Yes

No

No

No

Batch processing

Yes

No

No

No

No