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Table 1 Feature comparison of GOMCL and other tools for clustering of GO terms

From: GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions

 GOMCLEnrichment Map [10]ClueGO [12]DAVID [25]POSOC [26]
Clustering basisJaccard Coefficient/Overlap CoefficientJaccard Coefficient/Overlap CoefficientKappa statisticsKappa statisticsGO hierarchical distance
Clustering methodMarkov Clustering (MCL) algorithmVisual identificationIterative mergingIterative mergingRanking
Type of visualization supportNetwork and HierarchyNetworkNetworkTableTable
Compatible with other enrichment toolsYesYesNoNoNo
Batch processingYesNoNoNoNo