From: QuaDMutNetEx: a method for detecting cancer driver genes with low mutation frequency
Gene | c | D/R | COSMIC | DDBv2 | Gene | c | D/R | COSMIC | DDBv2 |
---|---|---|---|---|---|---|---|---|---|
Classical GBM | |||||||||
Metrics: | samples | genes | mutations | Genes in solution | Coverage | Excess coverage | Connected components | ||
n=69 | p=487 | 1192 | 6 | 0.6232 | 0.1163 | 5 | |||
EGFR | 21 | D | ✓ | ✓ | PCDHAC2 | 15 | ∙ | ∙ | ✓ |
DNAH9 | 4 | ∙ | ∙ | ✓ | GABRA6 | 4 | ∙ | ∙ | ✓ |
PTPRG | 2 | ∙ | ∙ | ✓ | TEK | 2 | ∙ | ∙ | ✓ |
Mesenchymal GBM | |||||||||
Metrics: | samples | genes | mutations | Genes in solution | Coverage | Excess coverage | Connected components | ||
n=75 | p=510 | 1310 | 12 | 0.7733 | 0.1552 | 4 | |||
PTEN | 23 | D | ✓ | ✓ | EGFR | 17 | D | ✓ | ✓ |
PIK3CA | 5 | D | ✓ | ✓ | CPNE8 | 3 | ∙ | ∙ | ✓ |
KDM2B | 3 | ∙ | ✓ | ✓ | NRXN1 | 3 | ∙ | ∙ | ✓ |
INPPL1 | 3 | ∙ | ∙ | ✓ | EZR | 2 | D | ✓ | ✓ |
GRB10 | 2 | ∙ | ∙ | ✓ | IRS1 | 2 | D | ✓ | ✓ |
IRS4 | 2 | ∙ | ∙ | ✓ | LZTR1 | 2 | D | ✓ | ✓ |
Proneural GBM | |||||||||
Metrics: | samples | genes | mutations | Genes in solution | Coverage | Excess coverage | Connected components | ||
n=44 | p=229 | 558 | 7 | 0.6364 | 0.0714 | 2 | |||
TP53 | 15 | R | ✓ | ✓ | PCDHAC2 | 5 | ∙ | ∙ | ✓ |
CHEK1 | 2 | ∙ | ∙ | ✓ | CREBBP | 2 | D/R | ✓ | ✓ |
DAXX | 2 | R | ✓ | ✓ | MECOM | 2 | R | ✓ | ✓ |
TBP | 2 | ∙ | ∙ | ✓ | |||||
Neural GBM | |||||||||
Metrics: | samples | genes | mutations | Genes in solution | Coverage | Excess coverage | Connected components | ||
n=41 | p=199 | 482 | 8 | 0.6585 | 0.0370 | 2 | |||
TP53 | 15 | R | ✓ | ✓ | ANK2 | 5 | ∙ | ∙ | ✓ |
PDGFRA | 2 | D | ✓ | ✓ | FLT1 | 2 | ∙ | ∙ | ✓ |
PTPN11 | 2 | D | ✓ | ✓ | CHD8 | 2 | ∙ | ∙ | ✓ |
DYNC1I1 | 2 | ∙ | ∙ | ✓ | KDR | 2 | D | ✓ | ✓ |