Nanopore basecalling from a perspective of instance segmentation

BMC Bioinformatics

Table 2 Results of read accuracy on the test set

Species	basecaller	Deletion	Insertion	Mismatch	Read Identity	unaligned	Read Accuracy
E. coli	Chiron	0.0692	0.0465	0.0600	0.8709	7/2000	0.8243
	URnano	0.0584	0.0533	0.0407	0.9010	8/2000	0.8476
	Guppy _taiyaki	0.0585	0.0343	0.0436	0.8978	7/2000	0.8636
λ-phage	Chiron	0.0799	0.0467	0.0641	0.8559	9/2000	0.8093
	URnano	0.0662	0.0455	0.0363	0.8975	10/2000	0.852
	Guppy _taiyaki	0.0655	0.0397	0.0481	0.8864	6/2000	0.8467
Human	Chiron	0.0983	0.0687	0.0866	0.8151	385/1000	0.7464
	URnano	0.0957	0.0788	0.0727	0.8316	375/1000	0.7528
	Guppy _taiyaki	0.0822	0.0748	0.0756	0.8422	352/1000	0.7674

ISSN: 1471-2105