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Table 1 Datasets from The Cancer Genome Atlas (TCGA) used for evaluation: colorectal cancer (CRC), glioblastoma multiforme (GBM), lung squamous cell carcinoma (LSCC) and breast cancer (BRCA). Omics features correspond to those mapable to NCI pathways

From: PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data

Dataset

Patients

Omics types

Features

  

mRNA

2295

CRC

294

miRNA

264

  

CNV

2310

  

mRNA

2039

GBM

273

miRNA

18

  

DNA methylation

1798

  

mRNA

2039

LSCC

106

miRNA

150

  

DNA methylation

1846

  

mRNA

2329

BRCA

747

miRNA

99

  

CNV

2334