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Table 3 Discovered gene families from the final selected PCSNPs

From: Discovery of significant porcine SNPs for swine breed identification by a hybrid of information gain, genetic algorithm, and frequency feature selection technique

No.

Gene symbol

Chr

MAPINFO

No.

Gene symbol

Chr

MAPINFO

No.

Gene symbol

Chr

MAPINFO

1

PTPRK

1

38598147

33

GALNT12

1

268890145

65

HES1

13

140688388

2

ABCA5

12

11388469

34

FIGN

15

75340693

66

CCDC13

13

28893435

3

SEMA3E

9

106779607

35

BMPR1B

8

133950496

67

KIT

8

43651639

4

KCNU1

15

14889528

36

PPEF2

8

75662581

68

GRK5

14

140846738

5

SLC28A3

10

34818681

37

GNAT3

9

110416160

69

PIK3C3

6

118157644

6

RTN3

2

7728326

38

CD3E

9

50672784

70

PDE4B

6

134910792

7

SORCS3

14

125978735

39

PSAP

14

80626307

71

LOC100153360

1

313111618

8

DBH

1

307192626

40

SNCA

8

138635995

72

LOC100739240

3

74337201

9

SNTB1

4

19453169

41

HACE1

1

80302938

73

NCR2

7

41832022

10

VAT1L

6

10041550

42

TRHR

4

30842196

74

CDK8

11

3651117

11

LOC100622482

6

82916168

43

NTS

5

101073253

75

SATB1

13

6000732

12

CUEDC1

12

35017301

44

ADRA1B

16

69129145

76

ROR2

14

3557219

13

CALB2

6

13899346

45

RXRG

4

93070713

77

TRPM2

2

143991472

14

MACROD1

2

7103886

46

AAAS

5

18962460

78

CAPZB

6

71859152

15

KLHL25

7

93415034

47

NEK2

9

144617825

79

ANKRD35

4

109093503

16

GRK5

14

140846738

48

RNF180

16

45700636

80

SECISBP2L

1

136455430

17

DPEP1

6

504970

49

EML5

7

117152298

81

LMX1B

1

301126002

18

LOC100155953

7

122798672

50

ABLIM1

14

135899761

82

DTL

9

144214338

19

ZMIZ1

14

88275273

51

RBM19

14

40500953

83

PPP2R5A

9

144185861

20

LOC100156904

1

296533542

52

PRUNE2

1

256372239

84

RCAN1

13

208012602

21

PCDH15

14

104808991

53

PDZK1IP1

6

119087839

85

RAPGEF4

15

24972365

22

SLC22A5

2

140066357

54

GAD2

10

54668661

86

LHX2

1

298735016

23

LNX1

8

42621415

55

CP

13

97407074

87

IQSEC3

5

69759629

24

DNAJB12

14

81222592

56

SAMD3

1

36604527

88

LY96

4

67548067

25

CDKAL1

7

17100569

57

SLC35F4

1

207232466

89

WHAMM

7

57639263

26

CRB2

1

297932234

58

FCRLB

4

96854257

90

CHD1L

4

110076256

27

SPOCK2

14

80904334

59

ENPP5

7

47241389

91

ADAMTS16

16

82812184

28

CCND2

5

68326348

60

CYP7B1

4

75934281

92

TBC1D14

8

3354915

29

TXNDC15

2

142718262

61

AGRP

6

25411042

93

PARM1

8

74934147

30

FRAS1

8

77822157

62

NOX4

9

25460973

94

FGFR1

15

55262655

31

A2M

5

65318067

63

LOC100511652

9

12772773

    

32

STAT3

12

20767800

64

ARHGAP26

2

150907623