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Table 1 The GenBank and the sequence read archive (SRA) study accession numbers as well as details on genome size and structure of the four plastid genomes used to demonstrate the functionality of PACVr. All size and position values are given in bp. Abbreviations used: n.a. = not applicable; pos. = position

From: PACVr: plastome assembly coverage visualization in R

Species name

GenBank

SRA study

Total size

Pos. LSC

Pos. (size) IRb

Pos. (size) SSC

Pos. (size) IRa

Archidasyphyllum excelsum

MH899017

SRP253816

151,880

1..83,242

83,243..108,250 (25,007)

108,251..126,872 (18,621)

126,873..151,880 (25,007)

Nuphar japonica

NC_045072

SRP253784

160,761

1..90,653

90,654..116,283 (25,629)

116,284..135,131 (18,847)

135,132..160,761 (25,629)

Pelargonium x hortorum

NC_008454

SRP015898

217,942

1..59,710

59,711..135,457 (75,746)

135,458..142,209 (6,751)

142,210..217,942 (75,732)

Prototheca cutis

NC_037480

DRP002975

51,673

n.a.

n.a.

n.a.

n.a.