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Fig. 5 | BMC Bioinformatics

Fig. 5

From: Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes

Fig. 5

Visual comparison of CHP-212 Chr 1 CNA profiles generated by various single-sample CN detection tools. Red, black, gray dots are bins belonging to focally-amplified, focally-deleted and CN-neutral regions respectively. The blue line represents the copy number of each CNA. Any amplitude transition indicates a new CNA region. Top panel shows the IBs identified by CNAtra (each red box represents one IB). CNAtra examines each IB to detect the FAs (second panel). Rest of the panels show CNA output by other single-sample detection tools. IB1 is the monoallelic 1p deletion while FA1 is a focal amplification that is detected by CNAtra, CNVnator and AMYCNE

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BMC Bioinformatics

ISSN: 1471-2105

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