From: Heterogeneous multiple kernel learning for breast cancer outcome evaluation
Classifier | Decision Tree | Random Forest | GA with Rotation Forest | BFA + RF | SVM | SVM |
---|---|---|---|---|---|---|
Kernel | Linear kernel | RBF kernel | ||||
GSE32394 | 0.7589 ± 0.2256 | 0.8000 ± 0.2449 | 0.7000 ± 0.3317 | 0.8000 ± 0.2449 | 0.9644 ± 0.0422 | 0.9344 ± 0.0456 |
GSE59993 | 0.8099 ± 0.0740 | 0.7484 ± 0.1438 | 0.8663 ± 0.0983 | 0.8474 ± 0.1381 | 0.8371 ± 0.0331 | 0.8287 ± 0.0247 |
GSE1872 | 1.0000 ± 0.0000 | 0.9951 ± 0.0178 | 0.9667 ± 0.1000 | 1.0000 ± 0.0000 | 0.3977 ± 0.2008 | 0.2042 ± 0.0686 |
GSE76260 | 0.8313 ± 0.0813 | 0.7889 ± 0.0441 | 0.8583 ± 0.0500 | 0.8167 ± 0.1856 | 0.7857 ± 0.0629 | 0.8357 ± 0.0213 |
GSE59246 | 0.6455 ± 0.0795 | 0.8486 ± 0.0349 | 0.8474 ± 0.1026 | 0.7646 ± 0.1304 | 0.8896 ± 0.0375 | 0.7629 ± 0.0094 |
BRCA1 | 0.9925 ± 0.0115 | 0.9727 ± 0.4166 | 0.9818 ± 0.3636 | 0.9909 ± 0.2727 | 0.9598 ± 0.0317 | 0.9918 ± 0.0060 |
BRCA2 | 0.9997 ± 0.0026 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 |
BRCA3 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 0.9997 ± 0.0026 | 1.0000 ± 0.0000 |
Classifier | SVM | MKL(d = 3) | MKL(d = 3) | MKL(d = 3) | MKL(d = 21) | HMKL |
Kernel | Hadamard kernel | RBF kernel | Hadamard kernel | Mixed kernels | Mixed kernels | |
GSE32394 | 0.9778 ± 0.0222 | 0.9422 ± 0.0422 | 0.9844 ± 0.0511 | 0.9867 ± 0.6333 | 0.9899 ± 0.0333 | 0.9933 ± 0.0378 |
GSE59993 | 0.8661 ± 0.0510 | 0.7073 ± 0.0532 | 0.8973 ± 0.0445 | 0.8990 ± 0.0336 | 0.9018 ± 0.0175 | 0.9069 ± 0.0178 |
GSE1872 | 1.0000 ± 0.0000 | 0.2667 ± 0.0894 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 |
GSE76260 | 0.8595 ± 0.0126 | 0.8302 ± 0.0419 | 0.8467 ± 0.0313 | 0.8604 ± 0.0416 | 0.8633 ± 0.0313 | 0.8735 ± 0.0190 |
GSE59246 | 0.8996 ± 0.0250 | 0.8939 ± 0.0317 | 0.8991 ± 0.0179 | 0.9006 ± 0.0292 | 0.9008 ± 0.0282 | 0.9048 ± 0.0047 |
BRCA1 | 0.9953 ± 0.0047 | 0.9921 ± 0.0061 | 0.9953 ± 0.0045 | 0.9957 ± 0.0032 | 0.9960 ± 0.0026 | 0.9967 ± 0.0027 |
BRCA2 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 |
BRCA3 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 | 1.0000 ± 0.0000 |