Fig. 3
From: Short paired-end reads trump long single-end reads for expression analysis
Effects of kallisto pseudo-alignment efficiency on differences in TPM estimate Spearman’s rank correlations between 2 × 40 vs. 1 × 75. Efficiency of 2 × 40 is presented as the total kallisto count for 2 × 40 for (a) transcripts and (b) genes, and contrasted with the efficiency of 1 × 75 in the form of count ratios for (c) transcripts and (d) genes. Symbol colors correspond to SRA accessions