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Fig. 8 | BMC Bioinformatics

Fig. 8

From: Enhancing fragment-based protein structure prediction by customising fragment cardinality according to local secondary structure

Fig. 8

A pictorial representation of the number of fragments contained in SS- Rosetta’s 9-mer and 3-mer files. For the 9-mers, since at positions 16, 17, 18, 19, 20 and 21 a helix of size 9 is predicted, only one fragment is used. The standard number of fragments, i.e. 25, is kept for all remaining locations. For the 3-mers, since at positions 4 to 9 a strand of size 3 is predicted, only 25 fragments are used, and at positions 16 to 25 a helix of size 3 is predicted, only 5 fragments are used. The standard number of fragments, i.e. 200, is kept for all remaining locations

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