TY - JOUR AU - Kelley, B. P. AU - Yuan, B. PY - 2004 DA - 2004// TI - PathBLAST: a tool for alignment of protein interaction networks JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh411 DO - 10.1093/nar/gkh411 ID - Kelley2004 ER - TY - JOUR AU - Koyutürk, M. AU - Kim, Y. PY - 2006 DA - 2006// TI - Pairwise alignment of protein interaction networks JO - J Comput Biol VL - 13 UR - https://doi.org/10.1089/cmb.2006.13.182 DO - 10.1089/cmb.2006.13.182 ID - Koyutürk2006 ER - TY - STD TI - Li Z, Wang Y, et al.Alignment of protein interaction networks by integer quadratic programming. In: 2006 International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE: 2006. p. 5527–30. ID - ref3 ER - TY - JOUR AU - Liang, Z. AU - Xu, M. AU - Teng, M. AU - Niu, L. PY - 2006 DA - 2006// TI - NetAlign: a web-based tool for comparison of protein interaction networks JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl287 DO - 10.1093/bioinformatics/btl287 ID - Liang2006 ER - TY - JOUR AU - Narayanan, M. AU - Karp, R. M. PY - 2007 DA - 2007// TI - Comparing protein interaction networks via a graph match-and-split algorithm JO - J Comput Biol VL - 14 UR - https://doi.org/10.1089/cmb.2007.0025 DO - 10.1089/cmb.2007.0025 ID - Narayanan2007 ER - TY - JOUR AU - Elmsallati, A. AU - Clark, C. AU - Kalita, J. PY - 2016 DA - 2016// TI - Global alignment of protein-protein interaction networks: A survey JO - IEEE/ACM Trans Comput Biol Bioinforma VL - 13 UR - https://doi.org/10.1109/TCBB.2015.2474391 DO - 10.1109/TCBB.2015.2474391 ID - Elmsallati2016 ER - TY - JOUR AU - Aladaǧ, A. E. AU - Erten, C. PY - 2013 DA - 2013// TI - SPINAL: Scalable protein interaction network alignment JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt071 DO - 10.1093/bioinformatics/btt071 ID - Aladaǧ2013 ER - TY - JOUR AU - Hashemifar, S. AU - Xu, J. PY - 2014 DA - 2014// TI - HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu450 DO - 10.1093/bioinformatics/btu450 ID - Hashemifar2014 ER - TY - JOUR AU - Neyshabur, B. AU - Khadem, A. AU - Hashemifar, S. AU - Arab, S. S. PY - 2013 DA - 2013// TI - NETAL: a new graph-based method for global alignment of protein-protein interaction networks JO - Bioinformatics VL - 29 UR - https://doi.org/10.1093/bioinformatics/btt202 DO - 10.1093/bioinformatics/btt202 ID - Neyshabur2013 ER - TY - JOUR AU - Patro, R. AU - Kingsford, C. PY - 2012 DA - 2012// TI - Global network alignment using multiscale spectral signatures JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts592 DO - 10.1093/bioinformatics/bts592 ID - Patro2012 ER - TY - JOUR AU - Singh, R. AU - Xu, J. AU - Berger, B. PY - 2008 DA - 2008// TI - Global alignment of multiple protein interaction networks with application to functional orthology detection JO - PNAS VL - 105 UR - https://doi.org/10.1073/pnas.0806627105 DO - 10.1073/pnas.0806627105 ID - Singh2008 ER - TY - JOUR AU - Clark, C. AU - Kalita, J. PY - 2014 DA - 2014// TI - A comparison of algorithms for the pairwise alignment of biological networks JO - Bioinformatics VL - 30 UR - https://doi.org/10.1093/bioinformatics/btu307 DO - 10.1093/bioinformatics/btu307 ID - Clark2014 ER - TY - STD TI - Malod-Dognin N, Ban K, Pržulj N. Unified alignment of protein-protein interaction networks. Sci Rep. 2017; 7(953). ID - ref13 ER - TY - STD TI - Alain FZ, Elena NI, Erik HWG. Meesters. A Beginner’s Guide to R: Springer; 2009. ID - ref14 ER - TY - JOUR AU - Camacho, C. AU - Coulouris, G. PY - 2009 DA - 2009// TI - BLAST+: architecture and applications JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-421 DO - 10.1186/1471-2105-10-421 ID - Camacho2009 ER - TY - JOUR AU - Kuhn, H. W. PY - 2005 DA - 2005// TI - The Hungarian method for the assignment problem JO - Naval Res Logist VL - 52 UR - https://doi.org/10.1002/nav.20053 DO - 10.1002/nav.20053 ID - Kuhn2005 ER - TY - JOUR AU - Borndörfer, R. AU - Heismann, O. PY - 2015 DA - 2015// TI - The hypergraph assignment problem JO - Discrete Optim VL - 15 UR - https://doi.org/10.1016/j.disopt.2014.11.002 DO - 10.1016/j.disopt.2014.11.002 ID - Borndörfer2015 ER - TY - JOUR AU - Klau, G. W. PY - 2009 DA - 2009// TI - A new graph-based method for pairwise global network alignment JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-S1-S59 DO - 10.1186/1471-2105-10-S1-S59 ID - Klau2009 ER - TY - JOUR AU - Malod-Dognin, N. AU - Pržulj, N. PY - 2015 DA - 2015// TI - L-GRAAL: Lagrangian graphlet-based network aligner JO - Bioinformatics VL - 31 UR - https://doi.org/10.1093/bioinformatics/btv130 DO - 10.1093/bioinformatics/btv130 ID - Malod-Dognin2015 ER - TY - JOUR AU - TPhan, H. T. AU - Sternberg, M. J. E. PY - 2012 DA - 2012// TI - PINALOG: A novel approach to align protein interaction networks—implications for complex detection and function prediction JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts119 DO - 10.1093/bioinformatics/bts119 ID - TPhan2012 ER - TY - JOUR AU - Park, D. AU - Singh, R. PY - 2011 DA - 2011// TI - IsoBase: a database of functionally related proteins across PPI networks JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1234 DO - 10.1093/nar/gkq1234 ID - Park2011 ER - TY - JOUR AU - Ruepp, A. AU - Brauner, B. PY - 2008 DA - 2008// TI - CORUM: the comprehensive resource of mammalian protein complexes JO - Nucleic Acids Res VL - 36 ID - Ruepp2008 ER - TY - JOUR AU - Gavin, A. -. C. AU - Aloy, P. PY - 2006 DA - 2006// TI - Proteome survey reveals modularity of the yeast cell machinery JO - Nature VL - 440 UR - https://doi.org/10.1038/nature04532 DO - 10.1038/nature04532 ID - Gavin2006 ER - TY - JOUR AU - Ruepp, A. AU - Zollner, A. PY - 2004 DA - 2004// TI - The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh894 DO - 10.1093/nar/gkh894 ID - Ruepp2004 ER - TY - JOUR AU - Luo, H. AU - Lin, Y. AU - Gao, F. AU - Zhang, C. -. T. AU - Zhang, R. PY - 2014 DA - 2014// TI - DEG 10, an update of the Database of Essential Genes that includes both protein-coding genes and non-coding genomic elements JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1131 DO - 10.1093/nar/gkt1131 ID - Luo2014 ER -