Table 3 Comparison of ML-Select and MUFOLD-CL
From: Decoy selection for protein structure prediction via extreme gradient boosting and ranking
# | M | ML-Select | MUFOLD-CL | ||||
|---|---|---|---|---|---|---|---|
|  |  | B1 | B 1−2 | B 1−3 | B1 | B 1−2 | B 1−3 |
1dtdb | n | 11.2% | 11.3% | 11.7% | 56.2% | 71.6% | 76.6% |
| Â | p | 100% | 100% | 100% | 2.42% | 2.34% | 2.36% |
| Â | s | 0.26% | 0.26% | 0.3% | 54.3% | 71.2% | 75.7% |
1wapa | n | 0.31% | 0.6% | 0.8% | 39.4% | 55.1% | 60.6% |
| Â | p | 100% | 100% | 100% | 0.51% | 0.49% | 0.49% |
| Â | s | 0.002% | 0.003% | 0.004% | 39% | 56.4% | 61.8% |
1hz6a | n | 4.6% | 4.6% | 4.6% | 43.1% | 48.5% | 60.6% |
| Â | p | 99.8% | 99.4% | 98.5% | 9.3% | 9.2% | 9.5% |
| Â | s | 0.44% | 0.44% | 0.45% | 44.2% | 50.5% | 60.6% |
1tig | n | 3.7% | 6.2% | 7.1% | 46.1% | 61% | 66.8% |
| Â | p | 100% | 100% | 100% | 2.1% | 2.2% | 2.2% |
| Â | s | 0.08% | 0.14% | 0.16% | 49.4% | 61.3% | 67.3% |
1dtja | n | 7.5% | 7.9% | 8.6% | 57.3% | 82.1% | 83.5% |
| Â | p | 100% | 100% | 99.6% | 3.0% | 3.3% | 3.3% |
| Â | s | 0.23% | 0.25% | 0.27% | 59.8% | 78.7% | 79.3% |
1bq9 | n | 0.62% | 1.4% | 2.4% | 38.1% | 47.7% | 61.4% |
| Â | p | 100% | 95.1% | 83% | 0.19% | 0.2% | 0.23% |
| Â | s | 0.002% | 0.004% | 0.01% | 57.8% | 68.9% | 76.6% |
1ail | n | 1.4% | 3.8% | 3.8% | 44.2% | 62.3% | 63.8% |
| Â | p | 100% | 92.5% | 86% | 0.48% | 0.53% | 0.53% |
| Â | s | 0.01% | 0.023% | 0.025% | 50.9% | 65.3% | 66.9% |
1c8ca | n | 0.8% | 1.0% | 1.1% | 46.7% | 59% | 64.6% |
| Â | p | 100% | 99% | 89.1% | 2.37% | 2.4% | 2.41% |
| Â | s | 0.02% | 0.03% | 0.034% | 54.8% | 68.4% | 74.7% |
2ci2 | n | 0% | 0% | 0% | 45.3% | 64.5% | 71.7% |
| Â | p | 0% | 0% | 0% | 3.3% | 3.4% | 3.4% |
| Â | s | 0.01% | 0.02% | 0.03% | 45.3% | 61.9% | 69% |
1fwp | n | 1.84% | 4.5% | 4.5% | 61.3% | 68% | 72% |
| Â | p | 97.7% | 75.4% | 60.3% | 0.17% | 0.16% | 0.16% |
| Â | s | 0.003% | 0.008% | 0.01% | 53.6% | 61% | 66% |
1sap | n | 2.63% | 2.63% | 2.63% | 45.7% | 48.9% | 52.6% |
| Â | p | 87.8% | 71.7% | 70.6% | 6.0% | 5.9% | 6.0% |
| Â | s | 0.21% | 0.25% | 0.26% | 53.4% | 58% | 62% |
1hhp | n | 12.2% | 18.3% | 24.2% | 61.2% | 65.3% | 85.7% |
| Â | p | 84.2% | 74.8% | 68% | 0.09% | 0.08% | 0.09% |
| Â | s | 0.012% | 0.02% | 0.03% | 57.8% | 67.5% | 77.1% |
2ezk | n | 1.3% | 1.3% | 1.3% | 58.4% | 69.5% | 78.4% |
| Â | p | 59.3% | 45.6% | 40.3% | 1.57% | 1.57% | 1.6% |
| Â | s | 0.03% | 0.045% | 0.51% | 59.5% | 70.6% | 78.3% |
1aoy | n | 0.11% | 0.23% | 0.29% | 57.3% | 75% | 79.7% |
| Â | p | 92.4% | 92.1% | 86.8% | 25.8% | 25.9% | 25.8% |
| Â | s | 0.03% | 0.07% | 0.09% | 57% | 74.2% | 79.2% |
2h5nd | n | 6.8% | 6.8% | 6.8% | 43.6% | 52.7% | 60.5% |
| Â | p | 94.1% | 83.4% | 71.4% | 0.35% | 0.36% The | 0.37% |
| Â | s | 0.028% | 0.029% | 0.034% | 50.7% | 59.3% | 66.4% |
1isua | n | 0.021% | 0.043% | 0.064% | 57.4% | 69.3% | 72.3% |
| Â | p | 17.5% | 16.8% | 16.4% | 7.8% | 7.7% | 7.7% |
| Â | s | 0.01% | 0.02% | 0.03% | 56.8% | 69.4% | 72.6% |
1cc5 | n | 0.16% | 0.16% | 0.16% | 58.8% | 69.9% | 72.8% |
| Â | p | 50% | 42.7% | 36.5% | 7.3% | 7.31% | 7.3% |
| Â | s | 0.022% | 0.026% | 0.03% | 54.3% | 64.5% | 67.2% |
1aly | n | 4.12% | 5.2% | 6.2% | 47.9% | 54.1% | 63.9% |
| Â | p | 42.6% | 42% | 41.7% | 0.35% | 0.33% | 0.34% |
| Â | s | 0.035% | 0.044% | 0.054% | 50.5% | 60.2% | 69.7% |