Fig. 1

fcScan search strategy and performance. Left: Example of data input that can be one of GRanges, data frame or BED/VCF files. Right: schematic representation of a search example for clusters containing a combination of 2 heterotypic genomic features (orange circles and green squares) and excluding a third genomic feature (yellow triangle) in a window size of 200 bp. Sites within identified clusters must obey the order and orientation defined. Bottom: Function call on the data represented in the upper left corner with its corresponding output. Only one cluster, marked by the “correct” sign, is called based on the criteria above. All remaining clusters are eliminated for the reason described above each case