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Table 2 Software packages and libraries used within VADR

From: VADR: validation and annotation of virus sequence submissions to GenBank

software and websitepurpose in VADR
Bio-Easel v0.09 alignment handling and sequence utility functions
Sequip v0.03 handling, output file handling and other utilities
Infernal v1.1.3 and use profile HMMs and CMs to classify, validate, align and annotate sequences
BLAST+ v2.9.0 BLAST databases and validate CDS/protein predictions