Root Digger: a root placement program for phylogenetic trees

BMC Bioinformatics

Table 1 Table of empirical datasets used for validation

Name	Dataset	Original model	Model used	Source
DS1	AngiospermsCDS12	GTR+\(\Gamma\)	UNREST + \(\Gamma\)4	[35]
DS2	AngiospermsCDS	GTR+\(\Gamma\)	UNREST + \(\Gamma\)4	[35]
DS3	Grasses	GTR+ G + I	UNREST + \(\Gamma\)4	[36]
DS4	Ficus	GTRCAT	UNREST + \(\Gamma\)4	[37]
DS5	SpidersMissingSpecies	NA^a	UNREST + \(\Gamma\)4	[38]
DS6	SpidersMitocondrial	NA^a	UNREST + \(\Gamma\)4	[38]
DS7	Beetles	GTR+G4	UNREST + \(\Gamma\)4	[33]
DS8	BeetlesHomogeneous	GTR+G4	UNREST + \(\Gamma\)4	[33]

^aThe paper states that PartitionFinder was used, but the results were not provided.
^bThe dataset is partitioned, and the partition file was provided. UNREST was used instead of any substitution matrices, but invariant sites and rate categories was preserved

ISSN: 1471-2105