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Table 5 First pathways and their corresponding genes.

From: Penalized partial least squares for pleiotropy

Gene

Count

(1)

ENPP1

27

NMNAT3

25

AOX1

24

NMNAT2

21

ENPP3

15

BST1

14

CD38

11

NT5M

10

NT5C1A

9

NT5C2

8

PNP

8

NAMPT

7

NNMT

7

NT5C3

7

NADSYN1

6

NNT

6

NT5E

5

NMNAT1

4

NUDT12

4

QPRT

4

NT5C1B

3

NADK

2

NT5C

2

(2)

RORA

282

NPAS2

60

RORB

34

ARNTL

23

CUL1

22

BTRC

13

RORC

13

PER3

12

CLOCK

11

PER2

11

CRY2

9

CSNK1E

9

BHLHE40

8

FBXW11

8

CRY1

7

FBXL3

7

NR1D1

7

TIMELESS

7

PER1

5

SKP1

4

BHLHE41

3

CSNK1D

3

RBX1

2

(3)

MTHFS

19

MTHFD1

11

MTHFR

11

MTHFD2L

9

MTHFD2

1

(4)

GLB1

22

MAN2B2

18

ENGASE

13

HEXB

12

MANBA

9

AGA

8

FUCA2

8

NEU2

5

FUCA1

3

HEXA

3

NEU3

3

GBA

2

MAN2B1

2

NEU1

2

NEU4

1

(5)

LRRN6C

197

FTO

122

NEGR1

93

SCARB1

33

ABCC8

31

SEC16B

25

LEPR

23

MAP2K5

23

NR3C1

18

FAIM2

17

DRD2

16

PPARG

16

SIM1

14

FANCL

12

GHRL

12

ADIPOQ

11

CRHR2

11

GNB3

10

INSR

10

GPRC5B

9

MC3R

9

PCSK1

9

TFAP2B

9

TNF

9

UCP1

9

(5)

CRHR1

8

ETV5

8

IL1RN

8

LDLR

8

HTR2C

7

MCHR1

7

TMEM18

7

BDNF

6

KCTD15

6

UCP2

6

ACE

5

ADRB2

4

IL6

4

LEP

4

MC4R

4

PLIN

4

PTPN11

4

UCP3

4

GNPDA2

3

NR0B2

3

RETN

3

CCL5

2

LEPROTL1

2

SH2B1

1

(6)

RPA3

25

NEIL3

24

XRCC5

21

EXO1

19

MSH3

19

NEIL2

17

RPA1

17

BRCA2

16

RAD23B

16

RFC3

14

PARP4

13

POLD3

12

RFC5

12

CHEK1

11

CHEK2

11

MSH6

11

TERT

10

CASP7

9

MNAT1

9

PARP1

9

RFC1

9

XPC

9

CASP3

8

ERCC5

8

ERCC6

8

(6)

TDG

8

XRCC1

8

DDB2

7

ERCC8

7

MSH2

7

PMS2

7

POLD1

7

POLE

7

RFC4

7

XRCC2

7

XRCC3

7

CDK2

6

GTF2H1

6

LIG1

6

MUTYH

6

PARP2

6

POLD2

6

POLE2

6

TP53

6

XPA

6

BRCA1

5

CDK7

5

CHRNA4

5

CUL4B

5

ERCC3

5

  1. The number of SNPs for each gene is presented: The pathways are (1) Nicotinate and nicotinamide metabolism (2) Circadian rhythm (3) Folate metabolism (4) Other glycan degradation (5) Obesity and obesity-related phenotypes (6) DNA repair