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Table 6 Last pathways and their corresponding genes.

From: Penalized partial least squares for pleiotropy

Gene

Count

(6)

GTF2H5

5

LIG3

5

MAPK8

5

NTHL1

5

OGG1

5

RAD50

5

RPA4

5

APEX1

4

CDKN1A

4

ERCC2

4

FEN1

4

GTF2H4

4

MBD4

4

POLE3

4

RAD51

4

RFC2

4

UNG

4

CDKN2D

3

CETN2

3

CUL4A

3

ERCC1

3

MLH1

3

MPG

3

POLB

3

POLE4

3

(6)

POLL

3

RPA2

3

SSBP1

3

CCNH

2

ERCC4

2

GTF2H3

2

HMGB1

2

(7)

UGT1A8

58

UGT2A1

29

MGST2

22

CYP2C8

17

AKR1C2

16

CYP2C9

15

CYP2B6

14

EPHX1

14

MGST3

14

AKR1C4

13

COMT

12

CYP2C19

12

CYP2S1

12

CYP2C18

11

ADH1B

10

ADH7

10

GSTA4

10

GSTZ1

10

MGST1

10

NAT2

10

ADH1C

9

AHR

9

NAT1

9

ADH6

8

AKR1C3

8

(7)

CYP1B1

8

UGT2B4

8

ADH4

7

ADH5

7

AKR1C1

7

ALDH3B1

7

CYP2E1

7

NQO1

7

ALDH1A3

6

CYP2F1

6

DHDH

6

SOD2

6

GSTA2

5

GSTM3

5

GSTO2

5

GSTP1

5

CYP1A1

4

CYP1A2

4

CYP3A43

4

GSTA3

4

GSTM4

4

UGT2B7

4

AKR1A1

3

ALDH3B2

3

CYP2A6

3

(7)

CYP3A4

3

CYP3A7

3

GSTM2

3

GSTM5

3

UGT2A3

3

UGT2B11

3

ADH1A

2

CYP2D6

2

(8)

TGFBR3

77

EBF2

60

BCAT1

51

VDR

34

KAL1

26

TM7SF3

19

CASC1

17

FGFR1OP2

12

FGFR1

11

KRAS2

10

CCR3

8

KISS1

8

PROK2

7

LIF

5

PROKR2

5

PTH1R

4

NKX2-1

2

(9)

TGFB2

22

IL18RAP

13

CYP4F11

12

EPHX2

12

IL7

11

IGFBP1

9

IGFBP3

9

IL17A

9

IL10

8

IGFBP4

7

IL15

7

MMP25

7

IL16

6

IL12A

5

IL13

5

IL18

5

IL19

5

IL2

5

IL9

5

PLA2G4B

5

IL3

4

TGFB1

4

IL1B

3

IL4

3

IL1A

2

IL23A

1

10)

EGFR

103

CCND3

29

MAPT

19

MAP2K4

15

EGF

11

MAP2K2

11

GSK3B

8

PLA2G6

8

PTEN

8

MAP2K1

6

MYBL2

6

AKT1

5

MAP2K3

5

FGFR3

3

MAP2K7

3

MAPK12

3

TP53I3

3

CCNA2

2

MAPK7

2

  1. The number of SNPs for each gene is presented. The pathways are (6) DNA repair (7) Metabolism of xenobiotics (8) Precocious or delayed puberty (9) Inflammatory response (10) Cell cycle