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Fig. 2 | BMC Bioinformatics

Fig. 2

From: CHICKN: extraction of peptide chromatographic elution profiles from large scale mass spectrometry data by means of Wasserstein compressive hierarchical cluster analysis

Fig. 2

Xnet and CHICKN comparison. a The method workflows. To allow for fair comparisons, we have focused on the core algorithms, depicted within the dotted rectangle. b–d The execution time comparison for Ecoli and for the UPS2GT datasets. The CHICKN execution time is decomposed into the data compression time (blue) and the clustering time (pink). Note that XNet had to be run on 5% of the Ecoli-DIA dataset and 10% of the Ecoli-FMS dataset only, to avoid “out of memory” issues. The experiments on Ecoli-DIA were performed on a laptop, while other datasets were processed with a multi-core machine

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BMC Bioinformatics

ISSN: 1471-2105

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