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Table 1 Generalization of shapes across cell type was cell type dependent

From: Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

Training sample Testing sample Promoter Enhancer Weak
Precision Recall Precision Recall Precision Recall
A549 A549 0.39 0.84 0.31 0.06 0.88 0.76
Brain (H) 0.16 0.79 0.38 0.05 0.89 0.62
H1 (L) 0.19 0.91 0.28 0.10 0.90 0.26
Brain (H) Brain (H) 0.45 0.26 0.33 0.34 0.75 0.80
A549 0.72 0.25 0.24 0.30 0.66 0.83
H1 (L) 0.74 0.13 0.26 0.33 0.80 0.86
H1 (L) H1 (L) 0.37 0.72 N/Aa N/A 0.81 0.90
A549 0.47 0.69 N/A N/A 0.66 0.77
Brain (H) 0.20 0.62 N/A N/A 0.74 0.75
  1. aN/A values indicate that no shapes were learned for the corresponding RE in the corresponding sample