From: Search for SINE repeats in the rice genome using correlation-based position weight matrices
(1) Family name | (2) HDRSM | (3) RM | HDRSM | RM | ||||
---|---|---|---|---|---|---|---|---|
(4) Overlap, same family | (5) Overlap, other family | (6) Not found | (7) Overlap, same family | (8) Overlap, other family | (9) Not found | |||
Os0006 | 854 | 323 | 69 | 668 | 117 | 69 | 121 | 133 |
Os0106 | 716 | 945 | 648 | 10 | 58 | 649 | 241 | 55 |
Os0277 | 261 | 133 | 17 | 157 | 87 | 17 | 59 | 57 |
Os0358 | 76 | 220 | 18 | 0 | 58 | 18 | 0 | 202 |
Os0509 | 418 | 407 | 281 | 0 | 137 | 281 | 2 | 124 |
Os0580 | 155 | 104 | 19 | 75 | 61 | 20 | 13 | 71 |
Os0604 | 55 | 53 | 24 | 7 | 24 | 25 | 14 | 14 |
Os0642 | 201 | 136 | 22 | 17 | 162 | 22 | 26 | 88 |
Os0660 | 171 | 179 | 51 | 1 | 119 | 51 | 2 | 126 |
Os0751 | 942 | 1292 | 641 | 10 | 291 | 648 | 30 | 614 |
Os1022 | 160 | 135 | 80 | 4 | 76 | 81 | 4 | 50 |
Os1374 | 507 | 364 | 139 | 40 | 328 | 139 | 32 | 193 |
Os1424 | 188 | 141 | 32 | 31 | 125 | 32 | 20 | 89 |
Os1427 | 144 | 131 | 98 | 0 | 46 | 98 | 1 | 32 |
Os1605 | 54 | 37 | 10 | 0 | 44 | 10 | 0 | 27 |
Os1611 | 86 | 91 | 63 | 2 | 21 | 63 | 1 | 27 |
Os1635 | 372 | 511 | 216 | 2 | 154 | 217 | 0 | 294 |
Os1661 | 55 | 75 | 15 | 7 | 33 | 15 | 16 | 44 |
Os1716 | 613 | 401 | 222 | 4 | 387 | 245 | 4 | 152 |
Os1815 | 1441 | 458 | 225 | 1 | 1215 | 230 | 2 | 226 |
Os1867 | 152 | 70 | 14 | 79 | 59 | 14 | 5 | 51 |
Os1922 | 391 | 289 | 92 | 2 | 297 | 92 | 0 | 197 |
Os2220 | 493 | 524 | 193 | 17 | 283 | 195 | 57 | 272 |
Os2338 | 325 | 351 | 46 | 52 | 227 | 48 | 15 | 288 |
Os2393 | 272 | 297 | 42 | 42 | 188 | 42 | 43 | 212 |
Os3050 | 329 | 284 | 115 | 3 | 211 | 127 | 0 | 157 |
RST-Osativa-Cluster_0 | 380 | 78 | 14 | 297 | 69 | 14 | 51 | 13 |
RST-Osativa-Cluster_1 | 137 | 291 | 6 | 98 | 33 | 6 | 259 | 26 |
RST-Osativa-Cluster_10 | 527 | 648 | 395 | 11 | 121 | 397 | 141 | 110 |
RST-Osativa-Cluster_11 | 174 | 21 | 4 | 137 | 33 | 4 | 3 | 14 |
RST-Osativa-Cluster_12 | 299 | 30 | 14 | 237 | 48 | 15 | 9 | 6 |
RST-Osativa-Cluster_2 | 1676 | 2991 | 1302 | 91 | 283 | 1359 | 1039 | 593 |
RST-Osativa-Cluster_3 | 305 | 117 | 9 | 249 | 47 | 9 | 87 | 21 |
RST-Osativa-Cluster_4 | 209 | 189 | 7 | 162 | 40 | 7 | 136 | 46 |
RST-Osativa-Cluster_5 | 147 | 331 | 35 | 73 | 39 | 35 | 232 | 64 |
RST-Osativa-Cluster_6 | 235 | 201 | 51 | 129 | 55 | 52 | 99 | 50 |
RST-Osativa-Cluster_7 | 241 | 323 | 50 | 139 | 52 | 50 | 206 | 67 |
RST-Osativa-Cluster_8 | 238 | 102 | 8 | 175 | 55 | 8 | 45 | 49 |
RST-Osativa-Cluster_9 | 31 | 29 | 0 | 10 | 21 | 0 | 8 | 21 |
Total | 14,030 | 13,302 | 5287 | 3039 | 5704 | 5404 | 3023 | 4875 |